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1

Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections

Salmén, Fredrik, Ståhl, Patrik L., Mollbrink, Annelie, Navarro, José Fernández, Vickovic, Sanja, Frisén, Jonas, Lundeberg, Joakim

Journal:

Nature Protocols

Année:

2018

Langue:

english

Fichier:

PDF, 3.30 MB

english, 2018

2

Toward the Single-Hour High-Quality Genome

Ståhl, Patrik L., Lundeberg, Joakim

Journal:

Annual Review of Biochemistry

Année:

2012

Langue:

english

Fichier:

PDF, 568 KB

english, 2012

3

Catalog of gene expression in adult neural stem cells and their in vivo microenvironment

Cecilia Williams, Valtteri Wirta, Konstantinos Meletis, Lilian Wikström, Leif Carlsson, Jonas Frisén, Joakim Lundeberg

Journal:

Experimental Cell Research

Année:

2006

Langue:

english

Fichier:

PDF, 633 KB

english, 2006

4

Generations of sequencing technologies

Erik Pettersson, Joakim Lundeberg, Afshin Ahmadian

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 611 KB

english, 2009

5

SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation

BergenstrÃ¥hle, Joseph, BergenstrÃ¥hle, Ludvig, Lundeberg, Joakim

Journal:

BMC Bioinformatics

Année:

2020

Fichier:

PDF, 2.35 MB

2020

6

Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography

Andersson, Alma, BergenstrÃ¥hle, Joseph, Asp, Michaela, BergenstrÃ¥hle, Ludvig, Jurek, Aleksandra, FernÃ¡ndez Navarro, JosÃ©, Lundeberg, Joakim

Journal:

Communications Biology

Année:

2020

Fichier:

PDF, 1.66 MB

2020

7

Variation in the hepatitis C virus NS5a region in relation to hypervariable region 1 heterogeneity during interferon treatment

Odeberg, Jacob, Yun, Zhibing, Sönnerborg, Anders, Weiland, Ola, Lundeberg, Joakim

Journal:

Journal of Medical Virology

Année:

1998

Langue:

english

Fichier:

PDF, 146 KB

english, 1998

8

Escherichia coli single-stranded DNA-binding protein, a molecular tool for improved sequence quality in pyrosequencing

Maria Ehn, Afshin Ahmadian, Peter Nilsson, Joakim Lundeberg, Sophia Hober

Journal:

ELECTROPHORESIS

Année:

2002

Langue:

english

Fichier:

PDF, 207 KB

english, 2002

9

ChemInform Abstract: Solid-Phase Differential Display

Joakim Lundeberg, Oystein Rosok, Anne Hansen Ree, Jacob Odeberg

Journal:

Année:

1999

Fichier:

PDF, 24 KB

1999

10

Microarray-based resequencing by apyrase-mediated allele-specific extension

Olle Ericsson, Åsa Sivertsson, Joakim Lundeberg, Afshin Ahmadian

Journal:

ELECTROPHORESIS

Année:

2003

Langue:

english

Fichier:

PDF, 313 KB

english, 2003

11

The biotin-streptavidin interaction can be reversibly broken using water at elevated temperatures

Anders Holmberg, Anna Blomstergren, Olof Nord, Morten Lukacs, Joakim Lundeberg, Mathias Uhlén

Journal:

ELECTROPHORESIS

Année:

2005

Langue:

english

Fichier:

PDF, 444 KB

english, 2005

12

Visual DNA as a diagnostic tool

Erik Pettersson, Patrik L. Ståhl, Hovsep Mahdessian, Max Käller, Joakim Lundeberg, Afshin Ahmadian

Journal:

ELECTROPHORESIS

Année:

2009

Langue:

english

Fichier:

PDF, 179 KB

english, 2009

13

Allelotyping by massively parallel pyrosequencing of SNP-carrying trinucleotide threads

Erik Pettersson, Pawel Zajac, Patrik L. Ståhl, Josefin A. Jacobsson, Robert Fredriksson, Claude Marcus, Helgi B. Schiöth, Joakim Lundeberg, Afshin Ahmadian

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 218 KB

english, 2008

14

Human immunodeficiency virus type 1 and cytomegalovirus in saliva

Erik Lucht, Jan Albert, Annika Linde, Wenmei Xu, Maria Brytting, Joakim Lundeberg, Mathias Uhlén, Göran Bratt, Eric Sandström, Anders Heimdahl, Carl-Erik Nord, Britta Wahren

Journal:

Journal of Medical Virology

Année:

1993

Langue:

english

Fichier:

PDF, 772 KB

english, 1993

15

Capture of Single-Stranded DNA Assisted by Oligonucleotide Modules

Deirdre O'Meara, Peter Nilsson, Per-Åke Nygren, Mathias Uhlén, Joakim Lundeberg

Journal:

Analytical Biochemistry

Année:

1998

Langue:

english

Fichier:

PDF, 166 KB

english, 1998

16

Analyses of Secondary Structures in DNA by Pyrosequencing

Mostafa Ronaghi, Malin Nygren, Joakim Lundeberg, Pål Nyrén

Journal:

Analytical Biochemistry

Année:

1999

Langue:

english

Fichier:

PDF, 136 KB

english, 1999

17

Quantitative Investigation of the Modular Primer Effect for DNA and Peptide Nucleic Acid Hexamers

Peter Nilsson, Deirdre O'Meara, Fredrik Edebratt, Björn Persson, Mathias Uhlén, Joakim Lundeberg, Per-Åke Nygren

Journal:

Analytical Biochemistry

Année:

1999

Langue:

english

Fichier:

PDF, 104 KB

english, 1999

18

Single-Nucleotide Polymorphism Analysis by Pyrosequencing

Afshin Ahmadian, Baback Gharizadeh, Anna C. Gustafsson, Fredrik Sterky, Pål Nyrén, Mathias Uhlén, Joakim Lundeberg

Journal:

Analytical Biochemistry

Année:

2000

Langue:

english

Fichier:

PDF, 129 KB

english, 2000

19

Analysis of p53 Mutations in Single Cells Obtained from Histological Tissue Sections

Åsa E. Persson, Gao Ling, Cecilia Williams, Helena Bäckvall, Jan Pontén, Fredrik Pontén, Joakim Lundeberg

Journal:

Analytical Biochemistry

Année:

2000

Langue:

english

Fichier:

PDF, 222 KB

english, 2000

20

Quantification of HIV-1 Using Multiple Quantitative Polymerase Chain Reaction Standards and Bioluminometric Detection

Malin Nygren, Mostafa Ronaghi, Pål Nyrén, Jan Albert, Joakim Lundeberg

Journal:

Analytical Biochemistry

Année:

2001

Langue:

english

Fichier:

PDF, 118 KB

english, 2001

21

Toward pyrosequencing on surface-attached genetic material by use of DNA-binding luciferase fusion proteins

Maria Ehn, Nader Nourizad, Kristina Bergström, Afshin Ahmadian, Pål Nyrén, Joakim Lundeberg, Sophia Hober

Journal:

Analytical Biochemistry

Année:

2004

Langue:

english

Fichier:

PDF, 512 KB

english, 2004

22

A cDNA RDA protocol using solid-phase technology suited for analysis in small tissue samples

Jacob Odeberg, Tim Wood, Åsa Blücher, Joseph Rafter, Gunnar Norstedt, Joakim Lundeberg

Journal:

Biomolecular Engineering

Année:

2000

Langue:

english

Fichier:

PDF, 235 KB

english, 2000

23

The mutagenic effect of ultraviolet-A1 on human skin demonstrated by sequencing the p53 gene in single keratinocytes

Åsa E. Persson, Desiree W. Edström, Helena Bäckvall, Joakim Lundeberg, Fredrik Pontén, Anne-Marie Ros, Cecilia Williams

Journal:

Photodermatology, Photoimmunology & Photomedicine

Année:

2002

Langue:

english

Fichier:

PDF, 189 KB

english, 2002

24

cDNA microarray analysis of small plant tissue samples using a cDNA tag target amplification protocol

Magnus Hertzberg, Maria Sievertzon, Henrik Aspeborg, Peter Nilsson, Göran Sandberg, Joakim Lundeberg

Journal:

The Plant Journal

Année:

2001

Langue:

english

Fichier:

PDF, 289 KB

english, 2001

25

Gene array identification ofIpf1/Pdx1-/-regulated genes in pancreatic progenitor cells

Per Svensson, Cecilia Williams, Joakim Lundeberg, Patrik Rydén, Ingela Bergqvist, Helena Edlund

Journal:

BMC Developmental Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2007

26

Dog Y chromosomal DNA sequence: identification, sequencing and SNP discovery

Christian Natanaelsson, Mattias CR Oskarsson, Helen Angleby, Joakim Lundeberg, Ewen Kirkness, Peter Savolainen

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 522 KB

english, 2006

27

Assembly of a gene sequence tag microarray by reversible biotin-streptavidin capture for transcript analysis ofArabidopsis thaliana

Valtteri Wirta, Anders Holmberg, Morten Lukacs, Peter Nilsson, Pierre Hilson, Mathias Uhlén, Rishikesh P Bhalerao, Joakim Lundeberg

Journal:

BMC Biotechnology

Année:

2005

Langue:

english

Fichier:

PDF, 1000 KB

english, 2005

28

Analysis of 70,000 EST sequences to study divergence between two closely relatedPopulusspecies

Per Unneberg, Michael Strömberg, Joakim Lundeberg, Stefan Jansson, Fredrik Sterky

Journal:

Tree Genetics & Genomes

Année:

2005

Langue:

english

Fichier:

PDF, 123 KB

english, 2005

29

Mutation spectra of epidermal p53 clones adjacent to basal cell carcinoma and squamous cell carcinoma

Helena Bäckvall, Sara Strömberg, Anna Gustafsson, Anna Asplund, Åsa Sivertsson, Joakim Lundeberg, Fredrik Ponten

Journal:

Experimental Dermatology

Année:

2004

Langue:

english

Fichier:

PDF, 4.36 MB

english, 2004

30

Genetic mosaicism in basal cell carcinoma

Anna Asplund, Åsa Sivertsson, Helena Bäckvall, Afshin Ahmadian, Joakim Lundeberg, Fredrik Ponten

Journal:

Experimental Dermatology

Année:

2005

Langue:

english

Fichier:

PDF, 4.76 MB

english, 2005

31

Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome

Jarmo Schrader, Richard Moyle, Rupali Bhalerao, Magnus Hertzberg, Joakim Lundeberg, Peter Nilsson, Rishikesh P. Bhalerao

Journal:

The Plant Journal

Année:

2004

Langue:

english

Fichier:

PDF, 261 KB

english, 2004

32

Quantification of Bordetella pertussis in clinical samples by colorimetric detection of competitive PCR products

ANN ERLANDSSON, ANDERS BÄCKMAN, MALIN NYGREN, JOAKIM LUNDEBERG, PER OLCÉN

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 1.09 MB

english, 1998

33

Differential cloning of growth hormone-regulated hepatic transcripts in the aged rat

Tollet-Egnell, Petra, Flores-Morales, Amilcar, Lundeberg, Joakim, Norstedt, Gunnar

Journal:

Nature Genetics

Année:

1999

Langue:

english

Fichier:

PDF, 91 KB

english, 1999

34

Molecular pathology in basal cell cancer with p53 as a genetic marker

Pontén, Fredrik, Berg, Cecilia, Ahmadian, Afshin, Ren, Zhi-Ping, Nistér, Monica, Lundeberg, Joakim, Uhlén, Mathias, Pontén, Jan

Journal:

Année:

1997

Langue:

english

Fichier:

PDF, 712 KB

english, 1997

35

Genetic instability in the 9q22.3 region is a late event in the development of squamous cell carcinoma

Ahmadian, Afshin, Ren, Zhi-Ping, Williams, Cecilia, Pontén, Fredrik, Odeberg, Jacob, Pontén, Jan, Uhlén, Mathias, Lundeberg, Joakim

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 299 KB

english, 1998

36

PATCHED and p53 gene alterations in sporadic and hereditary basal cell cancer

Ling, Gao, Ahmadian, Afshin, Persson, &#197, sa, Undén, Anne Birgitte, Afink, Gijs, Williams, Cecilia, Uhlén, Mathias, Toftgård, Rune, Lundeberg, Joakim, Pontén, Fredrik

Journal:

Année:

2001

Langue:

english

Fichier:

PDF, 494 KB

english, 2001

37

Expression Analysis of Growth and Energy Regulation-Associated Genes in Two Divergent Chicken Strains

SOJEONG KA, CAROLYN FITZSIMMONS, LINA JACOBSSON, PETER SAVOLAINEN, JOAKIM LUNDEBERG, PAUL B. SIEGEL, LEIF ANDERSSON, F.NN HALLBÖÖK

Journal:

Annals of the New York Academy of Sciences

Année:

2005

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2005

38

Semi-automated solid-phase DNA sequencing

Mathias Uhlén, Thomas Hultman, Johan Wahlberg, Joakim Lundeberg, Staffan Bergh, Bertil Petterson, Anders Holmberg, Stefan Ståhl, Tomas Moks

Journal:

Trends in Biotechnology

Année:

1992

Langue:

english

Fichier:

PDF, 451 KB

english, 1992

39

Tag-array based HPV genotyping by competitive hybridization and extension

Max Käller, Emilie Hultin, Biying Zheng, Baback Gharizadeh, Keng-Ling Wallin, Joakim Lundeberg, Afshin Ahmadian

Journal:

Journal of Virological Methods

Année:

2005

Langue:

english

Fichier:

PDF, 276 KB

english, 2005

40

Genome wide gene amplifications and deletions in Plasmodium falciparum

Ulf Ribacke, Bobo W. Mok, Valtteri Wirta, Johan Normark, Joakim Lundeberg, Fred Kironde, Thomas G. Egwang, Peter Nilsson, Mats Wahlgren

Journal:

Molecular and Biochemical Parasitology

Année:

2007

Langue:

english

Fichier:

PDF, 851 KB

english, 2007

41

Microarray-based AMASE as a novel approach for mutation detection

Max Käller, Afshin Ahmadian, Joakim Lundeberg

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Année:

2004

Langue:

english

Fichier:

PDF, 512 KB

english, 2004

42

Genetic tumor archeology: microdissection and genetic heterogeneity in squamous and basal cell carcinoma

Helena Bäckvall, Anna Asplund, Anna Gustafsson, Åsa Sivertsson, Joakim Lundeberg, Fredrik Ponten

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Année:

2005

Langue:

english

Fichier:

PDF, 646 KB

english, 2005

43

Expression profiling of adrenocortical neoplasms suggests a molecular signature of malignancy

David Velázquez-Fernández, Cecilia Laurell, Janos Geli, Anders Höög, Jacob Odeberg, Magnus Kjellman, Joakim Lundeberg, Bertil Hamberger, Peter Nilsson, Martin Bäckdahl

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 288 KB

english, 2005

44

Molecular cloning and characterization of a cDNA encoding poplar UDP-glucose dehydrogenase, a key gene of hemicellulose/pectin formation

Henrik Johansson, Fredrik Sterky, Bahram Amini, Joakim Lundeberg, Leszek A. Kleczkowski

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Année:

2002

Langue:

english

Fichier:

PDF, 285 KB

english, 2002

45

DNA mapping and sequencing technology

Joakim Lundeberg, Mathias Uhlén

Journal:

Trends in Biotechnology

Année:

1995

Langue:

english

Fichier:

PDF, 262 KB

english, 1995

46

Selection analysis of single-stranded clones using solid-phase techniques

Tatiana Vener, Anders Holmberg, Joakim Lundeberg, Mathias Uhlén

Journal:

Genetic Analysis: Biomolecular Engineering

Année:

1999

Langue:

english

Fichier:

PDF, 82 KB

english, 1999

47

Genome-wide profiling of Populus small RNAs

Daniel Klevebring, Nathaniel R Street, Noah Fahlgren, Kristin D Kasschau, James C Carrington, Joakim Lundeberg, Stefan Jansson

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 880 KB

english, 2009

48

Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing

Julia Sandberg, Marten Neiman, Afshin Ahmadian, Joakim Lundeberg

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 752 KB

english, 2010

49

Signal pathways JNK and NF-κB, identified by global gene expression profiling, are involved in regulation of TNFα-induced mPGES-1 and COX-2 expression in gingival fibroblasts

Tove Båge, Johan Lindberg, Joakim Lundeberg, Thomas Modéer, Tülay Yucel-Lindberg

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2010

50

Analysis of transcript and protein overlap in a human osteosarcoma cell line

Daniel Klevebring, Linn Fagerberg, Emma Lundberg, Olof Emanuelsson, Mathias Uhlén, Joakim Lundeberg

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 639 KB

english, 2010